Our Publications

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Interplay of Electrostatic Interaction and Steric Repulsion between Bacteria and Gold Surface Influences Raman Enhancement

Jia Dong, Jeong Hee Kim, Isaac Pincus, Sujan Manna, Jennifer M Podgorski, Yanmin Zhu, Loza F Tadesse

Preprint, 2025

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Universal Spectral Transfer with Physical Prior-Informed Deep Generative Learning

Yanmin Zhu, Loza F Tadesse

Preprint, 2024

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From Genotype to Phenotype: Raman Spectroscopy and Machine Learning for Label-Free Single-Cell Analysis

Yirui Zhang, Kai Chang, Babatunde Ogunlade, Liam Herndon, Loza F Tadesse, Amanda R Kirane, Jennifer A Dionne

ACS Nano, 2024

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Rapid, antibiotic incubation-free determination of tuberculosis drug resistance using machine learning and Raman spectroscopy

Babatunde Ogunlade, Loza F Tadesse, Hongquan Li, Nhat Vu, Niaz Banaei, Amy K Barczak, Amr AE Saleh, Manu Prakash, Jennifer A Dionne

Proceedings of the National Academy of Sciences 121, 2024

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MicrobioRaman: an open-access web repository for microbiological Raman spectroscopy data

Kang Soo Lee, Zachary Landry, Awais Athar, Uria Alcolombri, Pratchaya Pramoj Na Ayutthaya, David Berry, Philippe de Bettignies, Ji-Xin Cheng, Gabor Csucs, Li Cui, Volker Deckert, Thomas Dieing, Jennifer Dionne, Ondrej Doskocil, Glen D’Souza, Cristina García-Timermans, Notburga Gierlinger, Keisuke Goda, Roland Hatzenpichler, Richard J Henshaw, Wei E Huang, Ievgeniia Iermak, Natalia P Ivleva, Janina Kneipp, Patrick Kubryk, Kirsten Küsel, Tae Kwon Lee, Sung Sik Lee, Bo Ma, Clara Martínez-Pérez, Pavel Matousek, Rainer U Meckenstock, Wei Min, Peter Mojzeš, Oliver Müller, Naresh Kumar, Per Halkjær Nielsen, Ioan Notingher, Márton Palatinszky, Fátima C Pereira, Giuseppe Pezzotti, Zdenek Pilat, Filip Plesinger, Jürgen Popp, Alexander J Probst, Alessandra Riva, Amr AE Saleh, Ota Samek, Haley M Sapers, Olga T Schubert, Astrid KM Stubbusch, Loza F Tadesse, Gordon T Taylor, Michael Wagner, Jing Wang, Huabing Yin, Yang Yue, Renato Zenobi, Jacopo Zini, Ugis Sarkans, Roman Stocker

Nature Microbiology, 2024

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Sharpness-Aware Minimization (SAM) Improves Classification Accuracy of Bacterial Raman Spectral Data Enabling Portable Diagnostics

Kaitlin Zareno, Jarett Dewbury, Siamak Sorooshyari, Hossein Mobahi, Loza F Tadesse

ICLR 5th Workshop on practical ML for limited/low resource settings, 2024

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More than magnetic isolation: Dynabeads as strong Raman reporters toward simultaneous capture and identification of targets

Lee J, McDonald M, Mhlanga N, Kang JW, Karnik R, Tadesse LF

Journal of Raman Spectroscopy, 2023

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Combining acoustic bioprinting with AI-assisted Raman spectroscopy for high-throughput identification of bacteria in blood

Fareeha Safir, Nhat Vu, Loza F Tadesse, Kamyar Firouzi, Niaz Banaei, Stefanie S Jeffrey, Amr AE Saleh, Butrus (Pierre) T Khuri-Yakub, Jennifer A Dionne

Nano Letters 23, 2023 

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Toward rapid infectious disease diagnosis with advances in surface-enhanced Raman spectroscopy

Loza F Tadesse, Fareeha Safir, Chi-Sing Ho, Ximena Hasbach, Butrus Pierre Khuri-Yakub, Stefanie S Jeffrey, Amr AE Saleh, Jennifer Dionne

The Journal of Chemical Physics 152, 2020

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Plasmonic and Electrostatic Interactions Enable Uniformly Enhanced Liquid Bacterial Surface-Enhanced Raman Scattering (SERS)

Loza F Tadesse, Chi-Sing Ho, Dong-Hua Chen, Hamed Arami, Niaz Banaei, Sanjiv S Gambhir, Stefanie S Jeffrey, Amr AE Saleh, Jennifer Dionne

Nano letters 20, 2020

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Nanophotonic platforms for chiral sensing and separation

Michelle L Solomon, Amr AE Saleh, Lisa V Poulikakos, John M Abendroth, Loza F Tadesse, Jennifer A Dionne

Accounts of chemical research 53, 2020

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Effect of Transition Metal Oxide Cathodes on the Oxygen Evolution Reaction in Li–O2 Batteries

Dahyun Oh, Kumar Virwani, Loza Tadesse, Mark Jurich, Nagaphani Aetukuri, Leslie E Thompson, Ho-Cheol Kim, Donald S Bethune

The Journal of Physical Chemistry C 121, 2017

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Cooperative enhancement of the nonlinear optical response in conjugated energetic materials: A TD-DFT study

Andrew E Sifain, Loza F Tadesse, Josiah A Bjorgaard, David E Chavez, Oleg V Prezhdo, R Jason Scharff, Sergei Tretiak

The Journal of Chemical Physics 146, 2017

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Biotemplating pores with size and shape diversity for Li-oxygen Battery Cathodes

Dahyun Oh, Cagla Ozgit-Akgun, Esin Akca, Leslie E Thompson, Loza F Tadesse, Ho-Cheol Kim, Gökhan Demirci, Robert D Miller, Hareem Maune

Scientific reports 7, 2017

Our Patents

Polymer-coated beads

Polymer-coated beads serving as Raman reporter for simultaneous target binding and identification

Filed, Appl. No. : 63/501,380

Label-free, real-time, whole-cell response monitoring

Label-free, real-time, whole-cell response monitoring with liquid Raman spectroscopy

Filed, Appl. No.: PCT/US2021/048668.2021

Biotemplating pores with size and shape diversity

Biotemplating pores with size and shape diversity for Li-oxygen Battery Cathodes

Porous sheets US20180050913A1, 2018